PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00011.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 344aa    MW: 38576.1 Da    PI: 6.4974
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00011.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.1e-08119139526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               C++f++ G C +Gd+C FaHg
  Rsa1.0_00011.1_g00009.1 119 ACPDFRK-GGCIRGDSCEFAHG 139
                              7******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0866103IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5114140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.59E-5114143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.169114141IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6119139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5119141IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.568149173IPR000571Zinc finger, CCCH-type
SMARTSM003560.53149172IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MMIGETRRTY PTVEIPTWSV SEELFSPAMN SPDCSMLEAL AALHRYLPSN DPDPDSDPDM  60
LGPDSPVDAY SCDHFRMYDF KVRRCARGRS HDWTECPYAH PGEKARRRDP TKYSYSGTAC  120
PDFRKGGCIR GDSCEFAHGV FECWLHPARY RTQPCKDGGN CRRRVCFFAH SPDQLRSLHN  180
RSPDRVDCFD VSSPVRRAFQ LSVSPVSSSP PMSPRAESEL SRSLGCSSVN DVVSSFRNLQ  240
VKSFPSSCNS PLRCYQSGFG SPRGSILGHG LQSLHTITIR PGNMDTWENG LEEEPAVERV  300
VESGRELRAK MFEKLSKENC MDRAEPDQNS GEAPDVGWVS ELVM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137834.10.0PREDICTED: zinc finger CCCH domain-containing protein 49
RefseqXP_013685597.10.0PREDICTED: zinc finger CCCH domain-containing protein 49-like
SwissprotQ9M0G20.0C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLM4E5V30.0M4E5V3_BRARP; Uncharacterized protein
STRINGBra024157.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-180C3H family protein